PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G186300.3
Common NameB456_004G186300, LOC105791940
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LSD
Protein Properties Length: 148aa    MW: 15167.6 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G186300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD146.27.1e-152852125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+gCr+lL+YP+GA+sV+Ca+C+++
  Gorai.004G186300.3 28 CSGCRNLLMYPAGATSVCCAVCNAI 52
                        ***********************97 PP

2zf-LSD146.85e-156791125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        CggC+tlL+Y rGA+sV+C++C+tV
  Gorai.004G186300.3 67 CGGCHTLLMYIRGATSVQCSCCHTV 91
                        ************************9 PP

3zf-LSD141.81.7e-13105129125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+Cr lL+Y +GA+sV+Ca+C++V
  Gorai.004G186300.3 105 CGNCRMLLMYQYGARSVKCAVCNFV 129
                         ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.3E-142555IPR005735Zinc finger, LSD1-type
PfamPF069434.0E-122852IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.9E-156493IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.1E-12102130IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12105129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MPVPLAPYPT PPGSYTPPVN GAQSQLVCSG CRNLLMYPAG ATSVCCAVCN AITAVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGNCRM LLMYQYGARS  120
VKCAVCNFVT SAGGSASGAA EQKFNNT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.27511e-120seedling
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475710.11e-102PREDICTED: protein LOL1-like
RefseqXP_012475711.11e-102PREDICTED: protein LOL1-like
RefseqXP_012475712.11e-102PREDICTED: protein LOL1-like
SwissprotQ93ZB12e-80LOL1_ARATH; Protein LOL1
TrEMBLA0A0D2S2551e-102A0A0D2S255_G
STRINGVIT_02s0012g00990.t012e-86(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.13e-75lsd one like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]